2021 - T1A - WS2 - Phylogeny and inference: from models to data and back | Tag

33:23

published on February 5, 2021

ABC phylodynamics

By Samuel Alizon

Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

35:35

published on February 5, 2021

Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

By Rémi Monasson

Bayesian phylogeography along a continuum: sampling its way in a random walk

30:36

published on February 5, 2021

Bayesian phylogeography along a continuum: sampling its way in a random walk

By Stéphane Guindon

Laying foundations for very large scale comparative genomics

30:06

published on February 5, 2021

Laying foundations for very large scale comparative genomics

By Christophe Dessimoz

New methods for large-scale species tree estimation addressing GDL

29:48

published on February 5, 2021

New methods for large-scale species tree estimation addressing GDL

By Tandy Warnow

Tree-free phylodynamic inference for emerging viral pathogens and lineages

24:17

published on February 5, 2021

Tree-free phylodynamic inference for emerging viral pathogens and lineages

By Katia Koelle

Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

28:17

published on February 5, 2021

Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

By Chikara Furusawa

Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

29:49

published on February 5, 2021

Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

By François Blanquart

What process(es) explain(s) genetic diversity within species ?

30:20

published on February 5, 2021

What process(es) explain(s) genetic diversity within species ?

By Guillaume Achaz

Inferring phylogeny and function from different sequence spaces

30:39

published on February 5, 2021

Inferring phylogeny and function from different sequence spaces

By Alessandra Carbone

Evolution in spatially structured populations

29:46

published on February 5, 2021

Evolution in spatially structured populations

By Daniel Weissman

Bacterial evolution in complex environments

32:26

published on February 5, 2021

Bacterial evolution in complex environments

By KC Huang

Recombination with complex population structure drives genome evolution in many bacterial species

33:51

published on February 5, 2021

Recombination with complex population structure drives genome evolution in many bacterial species

By Erick Van Nimwegen

Models of coevolution in proteins: sampling, physics and evolution

29:09

published on February 5, 2021

Models of coevolution in proteins: sampling, physics and evolution

By Olivier Rivoire

Parameters and determinants of responses to selection in antibody libraries

30:20

published on February 5, 2021

Parameters and determinants of responses to selection in antibody libraries

By Clement Nizak

Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

29:51

published on February 5, 2021

Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

By Samir Suweis

The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

34:27

published on February 5, 2021

The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

By Simona Cocco

New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

31:14

published on February 5, 2021

New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

By Ada Altieri

Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

28:19

published on February 5, 2021

Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

By Rosalind Allen

29:43

published on February 5, 2021

The genomic view of diversification

By Amaury Lambert

Gene flow, innovation and the invention of microbial functions

32:31

published on February 5, 2021

Gene flow, innovation and the invention of microbial functions

By Eduardo Rocha

31:25

published on February 5, 2021

Capturing T cell receptor similarities

By Benny Chain

35:13

published on February 5, 2021

Wandering through sequence space

By Martin Weigt

A high-throughput approach to study epistasis in proteins

38:33

published on February 5, 2021

A high-throughput approach to study epistasis in proteins

By Daniel Weinreich

The retrospective view of molecular evolution

32:46

published on February 5, 2021

The retrospective view of molecular evolution

By Matteo Smerlak

Bacteria and Phage: Competition and Coexistence

26:29

published on February 5, 2021

Bacteria and Phage: Competition and Coexistence

By Mitarai Namiko

Solitary waves in virus-host co-evolution

34:03

published on February 5, 2021

Solitary waves in virus-host co-evolution

By Thierry Mora

Cancer evolution and metastasis under immune selection

30:46

published on February 5, 2021

Cancer evolution and metastasis under immune selection

By Marta Luksza

Mathematics
and Interactions

Albert Schwarz : Quantum Mechanics and Quantum Field Theory from Algebraic and Geometric Viewpoints

Clément Delcamp : Topological Symmetry and Duality in Quantum Lattice Models

Aggregation-Diffusion Equations & Collective Behavior: Analysis, Numerics and Applications / Conférence Chaire Jean Morlet: Equations d'agrégation-diffusion et comportement collectif: Analyse, schémas numériques et applications

Cours Sorbonne Université

Collection 2021 - T1A - WS2 - Phylogeny and inference: from models to data and back

ABC phylodynamics

Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

Bayesian phylogeography along a continuum: sampling its way in a random walk

Laying foundations for very large scale comparative genomics

New methods for large-scale species tree estimation addressing GDL

Tree-free phylodynamic inference for emerging viral pathogens and lineages

Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

What process(es) explain(s) genetic diversity within species ?

Inferring phylogeny and function from different sequence spaces

Evolution in spatially structured populations

Bacterial evolution in complex environments

Recombination with complex population structure drives genome evolution in many bacterial species

Models of coevolution in proteins: sampling, physics and evolution

Parameters and determinants of responses to selection in antibody libraries

Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

The genomic view of diversification

Gene flow, innovation and the invention of microbial functions

Capturing T cell receptor similarities

Wandering through sequence space

A high-throughput approach to study epistasis in proteins

The retrospective view of molecular evolution

Bacteria and Phage: Competition and Coexistence

Solitary waves in virus-host co-evolution

Cancer evolution and metastasis under immune selection

Quantum Mechanics and Quantum Field Theory from Algebraic and Geometric Viewpoints (1/4)

Metallic mean Wang tiles

Topological aspects of discrete spectrum

Approximating entropy/pressure for multidimensional shifts of finite type

Phase transitions on one-dimensional symbolic systems

Symmetries in symbolic dynamics